GitLab

Improved automatic finalization of xml tags in debugging files when
execution is halted.
Fixed that internal file format may be read incorrectly.

Replace str.back() with *str.rbegin()

Comment out faulty unused code.
Ensure dynarray<T,64>::iterator is parsed as a type.

Added 2-clause bsd license for cmake files requested in cmake script for
petsc.
Introduced cmake option for Mondriaan matrix partitioning package for
solvers.
Changed reading of solver's parameters database to fix uninitialized
access reported by dr.memory.
Fixed bug in svdnxn with static std::vector allocation.
Added features to OldDrawGrid example.
Added solutions to problems described in issue #13.

Fix introduced problem with installation script.

Fixed bug in auto-differentiation that would calculate incorrect weights
for derivatives in ad_val().
Adapted several geometrical and adjacency retrieval algorithms to handle
broken conformity of the grid during modification, more attention to the
problem is needed.
Added visual studio debugger helpers.
Fixed several issues with openmp support.
Added openmp parallelization of BiCGStab(L) solver.
Fixed issues that files overwritten with MPI_File* functionality may
contain previous information.
Fixed a bug in OctreeCutcell, added another example for it.
Fixed a bug in collective operations in mesh class.

Restored OctreeCutcell example;
Added FixEdgeOrder, CheckEdgeOrder algorithms to check of consistency of
2d elements;
Element::Connect now uses FixEdgeOrder for faces;
Automatic grid dimension detection for vtk;
Fixed bug that sets may contain invalid links to elements even after
ApplyModification;
Corrected condition estimator in ddpqiluc;
Switched off pseudoinverse in bicgstab(l) since svd algorithm is bad.

Pseudoinverse for polynomial matrix in bicgstab(l) to improve stability
(as in petsc);
Added RowMerger class for sum of sparse rows.

Synchronizing various changes

Don't write markers in internal mesh format.
Fixed bug in EndModification.

Handle situations with no Fortran compiler and no BLAS library.
Logic is moved upwards from ILU2 project, otherwise examples and tests
will not link with fortran libraries.

Replaced russian comments in doxygen.
Examples with OpenGL would not lead to error in cmake if no library is
found.

Disable OldDrawGrid and DrawMatrix examples.

Workaround for issue #9

Added early exit for internal BiCGStab(l). Added test example based on
#6. Resolved #6 for internal solvers.

Combined both mesh generators in one function.
Added visual comments.
Added option to save the mesh with specific file name.

Adapting mesh_file.cpp to new comparator's behavior.

Petsc understands common parameters. Support for different option files
for Petsc and Trilinos. Please see files in examples/MatSolve.

Tested automatic inmost with parmetis+zoltan+trilinos libraries linkage
with external CMake project through find_package(inmost). Removed
external dependency on io.hpp. Removed unnecessary link_directories
calls from scripts in examples.

Adding CMake installation scripts for library and examples.
find_package(inmost) was not tested.

Added support of Trilinos: AztecOO, ML, Ifpack, Belos. Added Petsc
divergence reasons. Described parameters, some parameters unified with
Trilinos.

Perform partitioning only for serial meshes in parallel mode.
Reorder rows in GeomParam table (Issue #3).

fixes for issue #1

Install instructions from readme file were tested on Linux machine.

Fixes for gcc and intel compilers.
gcc-4.1 clean with -Wall -Wextra
intel 11.1 clean with -Wcheck -w1
msvc2010 gives one unrelated warning

Huge update involving update of underlying data representation and
elements management. Different interaction with iterators. New
ElementSet representation.  Some annotation for documentation is added.
New data structures. Examples require update. (check
examples/CMakeLists.txt)

Replacing dereference of zero'th element by data();
Fixed issues in GridGen that prevented compilation by microsoft visual
studio compiler;
Fixed small bug introduced by previous commit.

Moving connections, markers, geometric type, sparse data from Storage
class to TagManager class by using standard handling of mesh data.

Added code comments, small fixes and improvements.

Added GridGen – simple parallel mesh generator
Added FVDiscr – simple two-point FVM scheme

Retrieval of elements by markers;
Introduced options for loading of files;
Fixed issues saving vtk format when not all topological tests are
active;
Introduced Connect / Disconnect functions for manipulations with mesh;
DrawGrid example can now visualize array of entered cells/faces for
debug purposes;
OldDrawGrid example demonstrates fast interactive mesh slicing and
onscreen element picking.

some changes