GitLab

Improved automatic finalization of xml tags in debugging files when
execution is halted.
Fixed that internal file format may be read incorrectly.

Fixed bug in auto-differentiation that would calculate incorrect weights
for derivatives in ad_val().
Adapted several geometrical and adjacency retrieval algorithms to handle
broken conformity of the grid during modification, more attention to the
problem is needed.
Added visual studio debugger helpers.
Fixed several issues with openmp support.
Added openmp parallelization of BiCGStab(L) solver.
Fixed issues that files overwritten with MPI_File* functionality may
contain previous information.
Fixed a bug in OctreeCutcell, added another example for it.
Fixed a bug in collective operations in mesh class.

Restored OctreeCutcell example;
Added FixEdgeOrder, CheckEdgeOrder algorithms to check of consistency of
2d elements;
Element::Connect now uses FixEdgeOrder for faces;
Automatic grid dimension detection for vtk;
Fixed bug that sets may contain invalid links to elements even after
ApplyModification;
Corrected condition estimator in ddpqiluc;
Switched off pseudoinverse in bicgstab(l) since svd algorithm is bad.

Don't write markers in internal mesh format.
Fixed bug in EndModification.

Maybe fixes VS2005/VS2008 compilation.
Should fix old gcc.

Fixed incorrect writing of sets data.
Returned ||Ax-b|| norm to solver.

Activated checking for cell duplication by default to cure problem when
loading distributed meshes with ghost cells on same processor.
Fixed problem that vtk reader may delete some nodes that were there
previously.
Removed possibility to pass parameters directly to internal solvers
through Solver::SetParameter* since they are overwritten later.
Added but not yet activated solver_test001.

Fixed tiny bug that resulted in #8.
Fixed pmesh_test000 not compiling on windows.
Fixed pmf format not properly saving number of tags.

Adapting mesh_file.cpp to new comparator's behavior.

Tested automatic inmost with parmetis+zoltan+trilinos libraries linkage
with external CMake project through find_package(inmost). Removed
external dependency on io.hpp. Removed unnecessary link_directories
calls from scripts in examples.

Various fixes

Cleaned bugs; added features.

Fixes for gcc and intel compilers.
gcc-4.1 clean with -Wall -Wextra
intel 11.1 clean with -Wcheck -w1
msvc2010 gives one unrelated warning

Huge update involving update of underlying data representation and
elements management. Different interaction with iterators. New
ElementSet representation.  Some annotation for documentation is added.
New data structures. Examples require update. (check
examples/CMakeLists.txt)

Moving connections, markers, geometric type, sparse data from Storage
class to TagManager class by using standard handling of mesh data.

Retrieval of elements by markers;
Introduced options for loading of files;
Fixed issues saving vtk format when not all topological tests are
active;
Introduced Connect / Disconnect functions for manipulations with mesh;
DrawGrid example can now visualize array of entered cells/faces for
debug purposes;
OldDrawGrid example demonstrates fast interactive mesh slicing and
onscreen element picking.

some changes